| Pos. | Fahrer | Fahrzeug | Team | Runden | Zeit | + | kmh |
| 1 | Pol Espargaro (E) | Derbi RSA | Tuenti Racing | 9 | 02:14,841 | | 157,572 |
| 2 | Marc Marquez (E) | Derbi RSA | Red Bull Ajo Motorsport | 8 | 02:15,418 | 00:00,577 | 156,900 |
| 3 | Bradley Smith (GB) | Aprilia RSA | Bancaja Aspar Team | 7 | 02:15,836 | 00:00,995 | 156,418 |
| 4 | Nicolás Terol (E) | Aprilia RSA | Bancaja Aspar Team | 9 | 02:16,331 | 00:01,490 | 155,850 |
| 5 | Efren Vazquez (E) | Derbi RSA | Tuenti Racing | 8 | 02:16,390 | 00:01,549 | 155,782 |
| 6 | Sandro Cortese (D) | Derbi RSA | Avant Mitsubishi Ajo | 8 | 02:17,741 | 00:02,900 | 154,254 |
| 7 | Danny Webb (GB) | Aprilia RSA | Andalucia Cajasol | 8 | 02:18,135 | 00:03,294 | 153,814 |
| 8 | Esteve Rabat (E) | Aprilia RSA | Blusens-STX | 8 | 02:18,472 | 00:03,631 | 153,440 |
| 9 | Luis Salom (E) | Aprilia | Stipa-Molenaar Racing GP | 7 | 02:18,516 | 00:03,675 | 153,391 |
| 10 | Jakub Kornfeil (CZ) | Aprilia RSW | Racing Team Germany | 9 | 02:18,636 | 00:03,795 | 153,258 |
| 11 | Randy Krummenacher (CH) | Aprilia RSA | Stipa-Molenaar Racing GP | 7 | 02:18,688 | 00:03,847 | 153,201 |
| 12 | Alexis Masbou (F) | Aprilia RSW | Ongetta Team | 9 | 02:18,699 | 00:03,858 | 153,189 |
| 13 | Johann Zarco (F) | Aprilia RSW | WTR San Marino Team | 7 | 02:18,734 | 00:03,893 | 153,150 |
| 14 | Alberto Moncayo (E) | Aprilia RSA | Andalucia Cajasol | 9 | 02:18,771 | 00:03,930 | 153,109 |
| 15 | Tomoyoshi Koyama (J) | Aprilia RSW | Racing Team Germany | 8 | 02:18,777 | 00:03,936 | 153,103 |
| 16 | Jasper Iwema (NL) | Aprilia RSW | CBC Corse | 8 | 02:19,051 | 00:04,210 | 152,801 |
| 17 | Sturla Fagerhaug (N) | Aprilia RSW | AirAsia - Sepang Int. Circuit | 9 | 02:19,256 | 00:04,415 | 152,576 |
| 18 | Simone Grotzki Giorgi (I) | Aprilia | Fontana Racing | 9 | 02:19,286 | 00:04,445 | 152,543 |
| 19 | Marcel Schrötter (D) | Honda RS | Interwetten Honda 125 | 9 | 02:19,807 | 00:04,966 | 151,975 |
| 20 | Louis Rossi (F) | Aprilia RSW | CBC Corse | 9 | 02:19,844 | 00:05,003 | 151,935 |
| 21 | Adrian Martin (E) | Aprilia RSA | Aeroport de Castello - Ajo | 7 | 02:20,046 | 00:05,205 | 151,715 |
| 22 | Jonas Folger (D) | Aprilia RSA | Ongetta Team | 7 | 02:20,169 | 00:05,328 | 151,582 |
| 23 | Khairuddin Zulfahmi (MAL) | Aprilia RSW | AirAsia - Sepang Int. Circuit | 6 | 02:20,564 | 00:05,723 | 151,156 |
| 24 | Lorenzo Savadori (I) | Aprilia RSW | Matteoni CP Racing | 9 | 02:20,912 | 00:06,071 | 150,783 |
| 25 | Luca Marconi (I) | Aprilia RSW | Ongetta Team | 9 | 02:21,224 | 00:06,383 | 150,450 |
| 26 | James Lodge (GB) | Honda | RS Earnshaws Motorcycles | 9 | 02:22,055 | 00:07,214 | 149,570 |
| 27 | Michael van der Mark (NL) | Lambretta | Lambretta Reparto Corse | 7 | 02:22,140 | 00:07,299 | 149,480 |
| 28 | Taylor Mackenzie (GB) | Honda | KRP | 9 | 02:22,324 | 00:07,483 | 149,287 |
| 29 | Danny Kent (GB) | Honda | Aztec Grand Prix | 8 | 02:22,779 | 00:07,938 | 148,811 |
| 30 | Deane Brown (GB) | Honda | Colin Appleyard/Macadam Racing | 8 | 02:23,581 | 00:08,740 | 147,980 |
| 31 | Marco Ravaioli (I) | Lambretta | Lambretta Reparto Corse | 5 | 02:23,695 | 00:08,854 | 147,863 |